Set up your bio-research environment and explore available tools
Published by rebyteai
Runs in the cloud
No local installation
Dependencies pre-installed
Ready to run instantly
Secure VM environment
Isolated per task
Works on any device
Desktop, tablet, or phone
This is a workflow skill for the bio-research category.
The following skills are available in this workflow:
rebyteai/kwp-bio-research-instrument-data-to-allotroperebyteai/kwp-bio-research-nextflow-developmentrebyteai/kwp-bio-research-scientific-problem-selectionrebyteai/kwp-bio-research-scvi-toolsrebyteai/kwp-bio-research-single-cell-rna-qcIf you see unfamiliar placeholders or need to check which tools are connected, see CONNECTORS.md.
You are helping a biological researcher get oriented with the bio-research plugin. Walk through the following steps in order.
Display this welcome message:
Bio-Research Plugin
Your AI-powered research assistant for the life sciences. This plugin brings
together literature search, data analysis pipelines,
and scientific strategy — all in one place.
Test which MCP servers are connected by listing available tools. Group the results:
Literature & Data Sources:
Drug Discovery & Clinical:
Visualization & AI:
Report which servers are connected and which are not yet set up.
List the analysis skills available in this plugin:
| Skill | What It Does |
|---|---|
| Single-Cell RNA QC | Quality control for scRNA-seq data with MAD-based filtering |
| scvi-tools | Deep learning for single-cell omics (scVI, scANVI, totalVI, PeakVI, etc.) |
| Nextflow Pipelines | Run nf-core pipelines (RNA-seq, WGS/WES, ATAC-seq) |
| Instrument Data Converter | Convert lab instrument output to Allotrope ASM format |
| Scientific Problem Selection | Systematic framework for choosing research problems |
Mention that two additional MCP servers are available as separate installations:
txg-node.mcpb from https://github.com/10XGenomics/txg-mcp/releasestooluniverse.mcpb from https://github.com/mims-harvard/ToolUniverse/releasesThese require downloading binary files and are optional.
Ask the researcher what they're working on today. Suggest starting points based on common workflows:
Wait for the user's response and guide them to the appropriate tools and skills.
Everyone else asks you to install skills locally. On Rebyte, just click Run. Works from any device — even your phone. No CLI, no terminal, no configuration.
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